1.Li, M., Frank, M.H., and Migicovsky, Z. ColourQuant: a high-throughput technique to extract and quantify colour phenotypes from plant images. Preprint:
2.Harris, Z.N., Klein, L.L., Awale, M., Swift, J., Migicovsky, Z., Bhakta, N., Frawley, E., Chitwood, D.H., Fennell, A., Kovacs, L.G., Kwasniewski, M., Londo, J.P., Ma, Q., and Miller, A.J. Root system influence on high dimensional leaf phenotypes over the grapevine growing season. Preprint:
3.Davies, T., Watts, S., McClure, K., Migicovsky, Z., and Myles, S. Phenotypic divergence between the cultivated apple (Malus domestica) and its primary wild progenitor (Malus sieversii).


35.Wright, A.H., Ali, S., Migicovsky, Z., Douglas, G.M., Yurgel, S., Bundury-Blanchette, A., Franklin, J., Adams, S., and Walker, A.K. (In Press). A Characterization of a Cool Climate Organic Vineyard’s Microbiome. Phytobiomes.
34.LaPlante, E.R., Fleming, M.B., Migicovsky, Z., Weber, M.G. (2021). Genome-wide association study reveals genomic region associated with beneficial mite recruitment phenotypes in the domesticated grapevine (Vitis vinifera). Genes, 12(7).
33.Byers, P.R.M., Evans, R.C., Migicovsky, Z., and Walker, A.K. (2021). Identifying the fungal symbionts of the endangered plant Crocanthemum canadense (Cistaceae) in Nova Scotia. Botany.
32.Watts, S., Migicovsky, Z., McClure, K., Yu, H.J., Amyotte, B., Baker, T., Bowlby, D., Burgher-MacLellan, K., Butler, L., Donald, R., Fan, L., Fillmore, S., Flewelling, J., Gardner, K., Hodges, M., Hughes, T., Jagadeesan, V., Lewis, N., MacDonell, E., MacVicar, L., McElroy, M., Money, D., O’Hara, M., Ong, Q., Campbell Palmer, L., Sawler, J., Vinqvist-Tymchuk, M., Rupasinghe, H.P.V., DeLong, J.M., Forney, C.F., Song, J., and Myles, S. (2021). Quantifying apple diversity: a phenomic characterization of Canada’s Apple Biodiversity Collection. Plants People Planet. doi: 10.1002/ppp3.10211
31.Migicovsky, Z., Yeats, T.H., Watts, S., Song, J., Forney, C.F., Burgher-MacLellan, K., Somers, D.J., Gong, Y., Zhang, Z., Vrebalov, J., van Velzen, R., Giovannoni, J.G., Rose, J.K.C., and Myles, S. (2021). Apple ripening is controlled by a NAC transcription factor. Frontiers in Genetics. doi: 10.3389/fgene.2021.671300
30.Migicovsky, Z., Cousins, P., Jordan, L.M., Myles, S., Striegler, R.K., Verdegaal, P., and Chitwood, D.H. (2021). Grapevine rootstocks affect growth-related scion phenotypes. Plant Direct.
29.Chitwood, D.H, Mullins, J., Migicovsky, Z., Frank, M., VanBuren, R., Londo, J. (2021). Vein-to-blade ratio is an allometric indicator of leaf size and plasticity. American Journal of Botany.
28.Migicovsky, Z., Gardner, K.M., Richards, C., Chao, C.T., Schwaninger, H.R., Fazio, G., Zhong, G.-Y., and Myles, S. (2021). Genomic consequences of apple improvement. Horticulture Research, 8:9.
27.Maimaitiyiming, M., Maimaitijang, M., Sidike, P., Sagan, V., Migicovsky, Z., Chitwood, D.H., Cousins, P., Dokoozlian, N., Miller, A.J., and Kwasniewski, M. (2020). Modeling early indicators of grapevine physiology using hyperspectral imaging and partial least squares regression (PLSR). IGARSS 2020-2020 IEEE International Geoscience and Remote Sensing Symposium. pp. 1117-1120.
26.Bryson, A.E. Brown, M.W., Mullins, J., Dong, W., Bahmani, K., Bornowski, N. Chi, C., Engelgau, P., Gettings, B., Gomezcano, F., Gregory, L.M., Haber, A.C., Hoh, D., Jennings, E.E., Ji, Z., Kaur, P., Raju, S.K.K., Long, Y., Lotreck, S.G., Mathieu, D.T., Ranaweera, T., Ritter, E.J., Sadohara, R., Shrote, R.Z., Smith, K.E., Teresi, S.J., Venegas, J., Wang, H., Wilson, M.L., Tarrant, A.R., Frank., M.H., Migicovsky, Z., Kumar, J., VanBuren, R., Londo, J.P., and Chitwood, D.H. (2020). Composite modeling of leaf shape across shoots discriminates Vitis species better than individual leaves. Applications in Plant Sciences.
25.d’Entremont, T.W., Migicovsky, Z., López-Guitérrez, J.C., and Walker, A.K. (2020). Saltmarsh rhizosphere fungi show shifts in community composition based on sediment properties and aboveground flora in the Bay of Fundy, Nova Scotia. Environmental Microbiology Reports.
24.Migicovsky, Z. (2020). (Commentary) Tasting improvement in fruit flavor using genomics. New Phytologist, 226:1539-1540.
23.Migicovsky, Z., Warschefsky, E., Klein, L.L., Miller, A.J. (2019). Using living germplasm collections to characterize, improve, and conserve woody perennials. Crop Science, 59:6.
22.McClure, K.A., Gong, Y., Song, J., Vingqst-Tymchuk, M., Campbell Palmer, L., Fan, L., Burger-MacLellan, K., Zhang, Z., Celton, J.-M., Forney, C.F., Migicovsky, Z., and Myles, S. (2019). Genome-wide association studies in apple reveal loci of large effect controlling apple polyphenols. Horticulture Research, 6:107.
21.Larsen, B., Migicovsky, Z., Jeppesen, A.A., Gardner, K., Toldam-Anderson, T.B., Myles, S., Ørgaard, M., Petersen, M.A., and Pedersen, C. (2019). Genome-wide association studies in apple reveal loci for aroma volatiles, sugar composition and harvest date. The Plant Genome, 12:170104.
20.Schier, H.E., Eliot, K., Herron, S.A., Landfried, L.K., Migicovsky, Z., Rubin, M.J., and Miller, A.J. (2019). Comparative analysis of perennial and annual Phaseolus seed nutrient concentrations. Sustainability, 11(10):2787.
19.Migicovsky, Z., Harris, Z.N., Klein, L.L., Li, M., McDermaid, A., Chitwood, D.H., Fennell, A., Kovacs, L.G., Kwasniewski, M., Londo, J.P., Ma, Q., and Miller, A.J. (2019). Rootstock effects on scion phenotypes in a ‘Chambourcin’ experimental vineyard. Horticulture Research, 6:64.
18.Peace, C.P., Bianco, L., Troggio, M., van de Weg, E., Cornille, A., Durel, C.E., Myles, S., Migicovsky, Z., Schaffer, R., Costes, E., Fazio, G., Yamane, H., van Nocker, S., Gottschalk, C., Costa, F., Changé, D., Zhang, X., Patocchi, A., Gardiner, S., Hardner, C., Kumar, S., Laurens, F., Bucher, E., Main, D., Jung, S., and Vanderzande, S. (2019). Apple whole genome sequences: recent advances and new prospects. Horticulture Research, 6:59.
17.Larsen, B., Gardner, K., Pedersen, C., Ørgaard, M., Migicovsky, Z., Myles, S., Toldam-Andersen, T.B. (2018). Population structure, relatedness and ploidy levels in an apple gene bank revealed through genotyping-by-sequencing. PloS ONE, 13:8.
16.Li, M., An, H., Angelovici, R., Bagaza, C., Batushansky, A., Clark, L., Coneva, V., Donoghue, M., Edwards, E., Fajardo, D., Fang, H., Frank, M., Gallaher, T., Gebken, S., Hill, T., Jansky, S., Kaur, B., Klahs, P., Klein, L.L., Kuraparthy, V., Londo, J., Migicovsky, Z., Miller, A., Mohn, R., Myles, S., Otoni, W., Pires, J.C., Riffer, E., Schmerler, S., Spriggs, E., Topp, C., Van Deynze, A., Zhang, K., Zhu, L., Zink, B.M., and Chitwood, D.H. (2018). Topological data analysis as a morphometric method: using persistent homology to demarcate a leaf morphospace. Frontiers in Plant Science, 9:553.
15.McElroy, M.S., Navarro, A.J.R., Mustiga, G., Stack, C., Gezan, S., Penha, G., Sarabia, W., Saquicela, D., Sotomayor, I., Douglas, G. M., Migicovsky, Z., Amores, F., Tarqui, O., Myles, S., Motamayor, J.C. (2018). Prediction of Cacao (Theobroma cacao) Resistance to Moniliophthora spp. Diseases via Genome-Wide Association Analysis and Genomic Selection. Frontiers in Plant Science, 9:343.
14.Migicovsky, Z., Li, M., Chitwood, D.H., and Myles, S. (2018). Morphometrics reveals complex and heritable apple leaf shapes. Frontiers in Plant Science, 8:2185.
13.Migicovsky, Z., Sawler, J., Gardner, K.M., Aradhya, M.K., Prins, B.H., Schwaninger, H.R., Bustamante, C.D., Buckler, E.S., Zhong, G.-Y., Brown, P.J., and Myles, S. (2017). Patterns of genomic and phenomic diversity in wine and table grapes. Horticulture Research, 4:17035.
12.Money, D., Migicovsky, Z., Gardner, K., and Myles, S. (2017). LinkImputeR: user-guided genotype calling and imputation for non-model organisms. BMC Genomics, 18:523.
11.Migicovsky, Z., and Myles, S. Exploiting wild relatives for genomics-assisted breeding of perennial crops. (2017). Frontiers in Plant Science, 8:460.
10.Migicovsky, Z., Sawler, J., Money, D., Eibach, R., Miller, A.J., Luby, J.J., Jamieson, A.R., Velasco, D., von Kintzel, S., Warner, J., Wührer, W., Brown, P.J., and Myles, S. (2016). Genomic ancestry estimation quantifies use of wild species in grape breeding. BMC Genomics, 17:478.
9.Migicovsky, Z., Gardner, K.M., Money, D., Sawler, J., Bloom, J.S., Moffett, P., Chao, C.T., Schwaninger, H., Fazio, G., Zhong, G.-Y., and Myles, S. (2016). Genome to phenome mapping in apple using historical data. The Plant Genome, 9:2. Selected as a Research Highlight by The Plant Genome:
8.Money, D., Gardner, K., Migicovsky, Z, Schwaninger, H., Zhong, G-Y., and Myles, S. (2015). LinkImpute: fast and accurate genotype imputation for non-model organisms. G3: Genes, Genomes, Genetics, 5(11):2383-90.
7.Migicovsky, Z., and Kovalchuk, I. (2015). Transgenerational inheritance of epigenetic response to cold in Arabidopsis thaliana. Biocatalysis and Agricultural Biotechnology, 4(1).
6.Migicovsky, Z., and Kovalchuk, I. (2014). Transgenerational changes in plant physiology and in transposon expression in response to UV-C stress in Arabidopsis thaliana. Plant Signaling & Behaviour, 9(11):e976490.
5.Migicovsky, Z., Yao, Y. and Kovalchuk, I. (2014). Transgenerational phenotypic and epigenetic changes in response to heat stress in Arabidopsis thaliana. Plant Signaling & Behaviour, 9(1):e27971.
4.Migicovsky, Z. and Kovalchuk, I. (2013). Changes to DNA methylation and homologous recombination frequency in the progeny of stressed plants. Biochemistry and Cell Biology, 91(1):1-5.
3.Migicovsky, Z., and Kovalchuk, I. (2012). Epigenetic modifications during angiosperm gametogenesis. Frontiers in Plant Science, 3:20.
2.Reza Rahavi, M., Migicovsky, Z., Titov, V., and Kovalchuk, I. (2011). Transgenerational adaptation to heavy metal salts in Arabidopsis. Frontiers in Plant Science, 2:91.
1.Migicovsky, Z. and Kovalchuk, I. (2011). Epigenetic memory in mammals. Frontiers in Genetics, 2:28.