Publications

SUBMITTED

1.Li, M., Frank, M.H., and Migicovsky, Z. ColourQuant: a high-throughput technique to extract and quantify colour phenotypes from plant images. Preprint: https://arxiv.org/abs/1903.01652
2.Yeats, T.H., Migicovsky, Z., Watts, S., Song, J., Forney, C.F., Burgher-MacLellan, K., Somers, D.J., Vrebalov, J., Giovannoni, J., Rose, J.K.C., and Myles, S. Allelic diversity of NAC18.1 is a major determinant of fruit firmness and harvest date in apple (Malus domestica). Preprint: https://doi.org/10.1101/708040
3.Migicovsky, Z., Cousins, P., Jordan, L.M., Myles, S., Striegler, R.K., Verdegaal, P., and Chitwood, D.H. Grapevine rootstocks affect growth-related phenotypes. Preprint: https://doi.org/10.1101/864850
4.Migicovsky, Z., Gardner, K.M., Richards, C., Chao, C.T., Schwaninger, H.R., Fazio, G., Zhong, G.-Y., and Myles, S. Genomic consequences of apple improvement.
5.Maimaitiyiming, M., Maimaitijang, M., Sidike, P., Sagan, V., Migicovsky, Z., Chitwood, D.H., Cousins, P., Dokoozlian, N., Miller, A.J., and Kwasniewski, M. Modeling early indicators of grapevine physiology using hyperspectral imaging and partial least squares regression (PLSR).
6.d’Entremont, T.W., Migicovsky, Z., López-Guitérrez, J.C., and Walker, A.K. Saltmarsh rhizosphere fungi show shifts in community composition based on sediment properties and aboveground flora in the Bay of Fundy, Nova Scotia.
7.Byers, P.R.M., Evans, R.C., Migicovsky, Z., and Walker, A.K. Identifying the fungal symbionts of the endangered plant Crocanthemum canadense (Cistaceae) in Nova Scotia.  

PUBLISHED/IN PRESS

25.Bryson, A.E. Brown, M.W., Mullins, J., Dong, W., Bahmani, K., Bornowski, N. Chi, C., Engelgau, P., Gettings, B., Gomezcano, F., Gregory, L.M., Haber, A.C., Hoh, D., Jennings, E.E., Ji, Z., Kaur, P., Raju, S.K.K., Long, Y., Lotreck, S.G., Mathieu, D.T., Ranaweera, T., Ritter, E.J., Sadohara, R., Shrote, R.Z., Smith, K.E., Teresi, S.J., Venegas, J., Wang, H., Wilson, M.L., Tarrant, A.R., Frank., M.H., Migicovsky, Z., Kumar, J., VanBuren, R., Londo, J.P., and Chitwood, D.H. (In Press). Composite modeling of leaf shape across shoots discriminates Vitis species better than individual leaves. Applications in Plant Sciences. Preprint: https://doi.org/10.1101/2020.06.22.163899
24.Migicovsky, Z. (2020). (Commentary) Tasting improvement in fruit flavor using genomics. New Phytologist, 226:1539-1540. https://doi.org/10.1111/nph.16591
23.Migicovsky, Z., Warschefsky, E., Klein, L.L., Miller, A.J. (2019). Using living germplasm collections to characterize, improve, and conserve woody perennials. Crop Science, 59:6. https://doi.org/10.2135/cropsci2019.05.0353
22.McClure, K.A., Gong, Y., Song, J., Vingqst-Tymchuk, M., Campbell Palmer, L., Fan, L., Burger-MacLellan, K., Zhang, Z., Celton, J.-M., Forney, C.F., Migicovsky, Z., and Myles, S. (2019). Genome-wide association studies in apple reveal loci of large effect controlling apple polyphenols. Horticulture Research, 6:107. https://doi.org/10.1038/s41438-019-0190-y
21.Larsen, B., Migicovsky, Z., Jeppesen, A.A., Gardner, K., Toldam-Anderson, T.B., Myles, S., Ørgaard, M., Petersen, M.A., and Pedersen, C. (2019). Genome-wide association studies in apple reveal loci for aroma volatiles, sugar composition and harvest date. The Plant Genome, 12:170104. https://doi.org/10.3835/plantgenome2018.12.0104
20.Schier, H.E., Eliot, K., Herron, S.A., Landfried, L.K., Migicovsky, Z., Rubin, M.J., and Miller, A.J. (2019). Comparative analysis of perennial and annual Phaseolus seed nutrient concentrations. Sustainability, 11(10):2787. https://doi.org/10.3390/su11102787
19.Migicovsky, Z., Harris, Z.N., Klein, L.L., Li, M., McDermaid, A., Chitwood, D.H., Fennell, A., Kovacs, L.G., Kwasniewski, M., Londo, J.P., Ma, Q., and Miller, A.J. (2019). Rootstock effects on scion phenotypes in a ‘Chambourcin’ experimental vineyard. Horticulture Research, 6:64. https://doi.org/10.1038/s41438-019-0146-2
18.Peace, C.P., Bianco, L., Troggio, M., van de Weg, E., Cornille, A., Durel, C.E., Myles, S., Migicovsky, Z., Schaffer, R., Costes, E., Fazio, G., Yamane, H., van Nocker, S., Gottschalk, C., Costa, F., Changé, D., Zhang, X., Patocchi, A., Gardiner, S., Hardner, C., Kumar, S., Laurens, F., Bucher, E., Main, D., Jung, S., and Vanderzande, S. (2019). Apple whole genome sequences: recent advances and new prospects. Horticulture Research, 6:59. https://doi.org/10.1038/s41438-019-0141-7
17.Larsen, B., Gardner, K., Pedersen, C., Ørgaard, M., Migicovsky, Z., Myles, S., Toldam-Andersen, T.B. (2018). Population structure, relatedness and ploidy levels in an apple gene bank revealed through genotyping-by-sequencing. PloS ONE, 13:8.  https://doi.org/10.1371/journal.pone.0201889
16.Li, M., An, H., Angelovici, R., Bagaza, C., Batushansky, A., Clark, L., Coneva, V., Donoghue, M., Edwards, E., Fajardo, D., Fang, H., Frank, M., Gallaher, T., Gebken, S., Hill, T., Jansky, S., Kaur, B., Klahs, P., Klein, L.L., Kuraparthy, V., Londo, J., Migicovsky, Z., Miller, A., Mohn, R., Myles, S., Otoni, W., Pires, J.C., Riffer, E., Schmerler, S., Spriggs, E., Topp, C., Van Deynze, A., Zhang, K., Zhu, L., Zink, B.M., and Chitwood, D.H. (2018). Topological data analysis as a morphometric method: using persistent homology to demarcate a leaf morphospace. Frontiers in Plant Science, 9:553. https://doi.org/10.3389/fpls.2018.00553
15.McElroy, M.S., Navarro, A.J.R., Mustiga, G., Stack, C., Gezan, S., Penha, G., Sarabia, W., Saquicela, D., Sotomayor, I., Douglas, G. M., Migicovsky, Z., Amores, F., Tarqui, O., Myles, S., Motamayor, J.C. (2018). Prediction of Cacao (Theobroma cacao) Resistance to Moniliophthora spp. Diseases via Genome-Wide Association Analysis and Genomic Selection. Frontiers in Plant Science, 9:343. https://doi.org/10.3389/fpls.2018.00343
14.Migicovsky, Z., Li, M., Chitwood, D.H., and Myles, S. (2018). Morphometrics reveals complex and heritable apple leaf shapes. Frontiers in Plant Science, 8:2185. https://doi.org/10.3389/fpls.2017.02185
13.Migicovsky, Z., Sawler, J., Gardner, K.M., Aradhya, M.K., Prins, B.H., Schwaninger, H.R., Bustamante, C.D., Buckler, E.S., Zhong, G.-Y., Brown, P.J., and Myles, S. (2017). Patterns of genomic and phenomic diversity in wine and table grapes. Horticulture Research, 4:17035. https://doi.org/10.1038/hortres.2017.35
12.Money, D., Migicovsky, Z., Gardner, K., and Myles, S. (2017). LinkImputeR: user-guided genotype calling and imputation for non-model organisms. BMC Genomics, 18:523. https://doi.org/10.1186/s12864-017-3873-5
11.Migicovsky, Z., and Myles, S. Exploiting wild relatives for genomics-assisted breeding of perennial crops. (2017). Frontiers in Plant Science, 8:460. https://doi.org/10.3389/fpls.2017.00460
10.Migicovsky, Z., Sawler, J., Money, D., Eibach, R., Miller, A.J., Luby, J.J., Jamieson, A.R., Velasco, D., von Kintzel, S., Warner, J., Wührer, W., Brown, P.J., and Myles, S. (2016). Genomic ancestry estimation quantifies use of wild species in grape breeding. BMC Genomics, 17:478. https://doi.org/10.1186/s12864-016-2834-8
9.Migicovsky, Z., Gardner, K.M., Money, D., Sawler, J., Bloom, J.S., Moffett, P., Chao, C.T., Schwaninger, H., Fazio, G., Zhong, G.-Y., and Myles, S. (2016). Genome to phenome mapping in apple using historical data. The Plant Genome, 9:2. https://doi.org/10.3835/plantgenome2015.11.0113 Selected as a Research Highlight by The Plant Genome: https://dl.sciencesocieties.org/story/2016/jun/mon/genome-to-phenome-mapping-in-apple-using-historical-data
8.Money, D., Gardner, K., Migicovsky, Z, Schwaninger, H., Zhong, G-Y., and Myles, S. (2015). LinkImpute: fast and accurate genotype imputation for non-model organisms. G3: Genes, Genomes, Genetics, 5(11):2383-90. https://doi.org/10.1534/g3.115.021667
7.Migicovsky, Z., and Kovalchuk, I. (2015). Transgenerational inheritance of epigenetic response to cold in Arabidopsis thaliana. Biocatalysis and Agricultural Biotechnology, 4(1). https://doi.org/10.1016/j.bcab.2014.09.001
6.Migicovsky, Z., and Kovalchuk, I. (2014). Transgenerational changes in plant physiology and in transposon expression in response to UV-C stress in Arabidopsis thaliana. Plant Signaling & Behaviour, 9(11):e976490. https://doi.org/10.4161/15592324.2014.976490
5.Migicovsky, Z., Yao, Y. and Kovalchuk, I. (2014). Transgenerational phenotypic and epigenetic changes in response to heat stress in Arabidopsis thaliana. Plant Signaling & Behaviour, 9(1):e27971. https://doi.org/10.4161/psb.27971
4.Migicovsky, Z. and Kovalchuk, I. (2013). Changes to DNA methylation and homologous recombination frequency in the progeny of stressed plants. Biochemistry and Cell Biology, 91(1):1-5. https://doi.org/10.1139/bcb-2012-0046
3.Migicovsky, Z., and Kovalchuk, I. (2012). Epigenetic modifications during angiosperm gametogenesis. Frontiers in Plant Science, 3:20. https://doi.org/10.3389/fpls.2012.00020
2.Reza Rahavi, M., Migicovsky, Z., Titov, V., and Kovalchuk, I. (2011). Transgenerational adaptation to heavy metal salts in Arabidopsis. Frontiers in Plant Science, 2:91. https://doi.org/10.3389/fpls.2011.00091
1.Migicovsky, Z. and Kovalchuk, I. (2011). Epigenetic memory in mammals. Frontiers in Genetics, 2:28. https://doi.org/10.3389/fgene.2011.00028